{"id":225,"date":"2020-04-13T21:33:17","date_gmt":"2020-04-13T21:33:17","guid":{"rendered":"http:\/\/iimcb.e-kei.pl\/corefacility\/?page_id=225"},"modified":"2025-03-17T09:30:20","modified_gmt":"2025-03-17T09:30:20","slug":"spr","status":"publish","type":"page","link":"https:\/\/core-facility.iimcb.gov.pl\/spr\/","title":{"rendered":"SPR"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"225\" class=\"elementor elementor-225\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-42e6a7f6 elementor-section-stretched elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"42e6a7f6\" data-element_type=\"section\" data-e-type=\"section\" data-settings=\"{&quot;stretch_section&quot;:&quot;section-stretched&quot;}\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-38f444fd\" data-id=\"38f444fd\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-3725629c elementor-widget elementor-widget-text-editor\" data-id=\"3725629c\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><\/p>\n<h2 style=\"text-align: center;\"><span style=\"font-size: 14pt; color: #000000;\"><strong><u>S<\/u>urface <span style=\"text-decoration: underline;\">P<\/span>lasmon <u>R<\/u>esonance<\/strong><\/span><\/h2>\n<div>\n<p class=\"wp-block-paragraph\" style=\"text-align: center;\"><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #000000;\"><strong>Room 612<\/strong><\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #000000;\"><strong>Contact: <a style=\"color: #000000;\" href=\"https:\/\/core-facility.iimcb.gov.pl\/krzysztof-skowronek\/\"><span style=\"color: #3366ff;\">K. Skowronek<\/span><\/a><\/strong><\/span><\/p>\n<p style=\"text-align: center;\"><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #000000;\"><strong>Access: collaboration\/contracted research, experienced users (internal)<\/strong><\/span><\/p>\n<\/div>\n<p><\/p>\n<p><\/p>\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large\"><img fetchpriority=\"high\" decoding=\"async\" width=\"339\" height=\"317\" class=\"wp-image-229\" src=\"http:\/\/iimcb.e-kei.pl\/corefacility\/wp-content\/uploads\/2020\/04\/SPR1.jpg\" alt=\"\" \/><\/figure>\n<\/div>\n<p><\/p>\n<p><\/p>\n<p class=\"has-text-color has-very-dark-gray-color wp-block-paragraph\" style=\"font-size: 0;\"><strong>Biacore S200 (GE Healthcare), 20<\/strong><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #339966;\"><strong><span class=\"has-inline-color has-vivid-green-cyan-color\">General description<\/span><\/strong><\/span><\/p>\n<p><\/p>\n<p><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif; color: #000000; font-size: 12pt;\">This technique is used for detailed kinetic characterization of bi-molecular interactions. One of interacting partners (interactants) is immobilized on sensor surface (<strong><em>ligand<\/em><\/strong>) while the other one (<strong><em>analyte<\/em><\/strong>) is injected with a buffer. By measuring SPR angle, changes of refractive index in ~200 nm layer on the sensor surface are recorded in a real time (<strong><em>sensorgram<\/em><\/strong>). This technique does not require labelling of interactants nor impose any limitations on buffer.\u00a0 Series of sensorgrams obtained at different analyte concentrations are used in global fitting to obtain k<sub>off<\/sub> and k<sub>on <\/sub>kinetic constants of an interaction. The method is relatively fast (one injection usually takes 10-20 minutes) and consumes minute amounts of interactants (~0.5 ml of ligand and analyte solutions at concentrations ~ 5 x expected K<sub>D<\/sub>).<\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #339966;\"><strong><span class=\"has-inline-color has-vivid-green-cyan-color\">Applications<\/span><\/strong><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<ul class=\"wp-block-list\">\n<li><span style=\"font-family: georgia, palatino, serif; color: #000000; font-size: 12pt;\">Kinetic characterization of molecular interaction. Especially useful for comparing multiple analytes (small molecules, protein variants) or buffer impact<\/span><\/li>\n<\/ul>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large is-resized\"><span style=\"font-family: georgia, palatino, serif;\"><img decoding=\"async\" class=\"wp-image-230 aligncenter\" src=\"http:\/\/iimcb.e-kei.pl\/corefacility\/wp-content\/uploads\/2020\/04\/SPR2.jpg\" alt=\"\" width=\"323\" height=\"203\" \/><\/span><\/figure>\n<\/div>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-large is-resized\"><span style=\"font-family: georgia, palatino, serif;\"><img decoding=\"async\" class=\"wp-image-231\" src=\"http:\/\/iimcb.e-kei.pl\/corefacility\/wp-content\/uploads\/2020\/04\/SPR3.jpg\" alt=\"\" width=\"320\" height=\"205\" \/><\/span><\/figure>\n<\/div>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<ul class=\"wp-block-list\">\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Affinity measurement. Only equilibrium K<sub>D<\/sub> is measured but such assay is far more robust than full kinetic characterization.<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Inhibitor ranking\/characterization. Influence of third component (one or multiple) on bi-molecular interaction can be studied.<\/span><\/li>\n<\/ul>\n<p><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><\/span><\/p>\n<ul class=\"wp-block-list\">\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Library screening. Medium throughput method for screening best ligand-binder in library of up to 394 potential interactants in a single unattended experiment.<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Antibody characterization (ranking, binning, mapping)<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Thermodynamic analysis. Series of measurements is performed at different temperatures and van &#8216;t Hoff plot and is used to estimate interaction enthalpy and entropy<\/span><\/li>\n<\/ul>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif; color: #339966; font-size: 14pt;\"><strong><span class=\"has-inline-color has-vivid-green-cyan-color\">Sample requirements<\/span><\/strong><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><strong>Ligand<\/strong>: Monodispersed and homogeneous or selectively \u201ccapturable\u201d (selective capture of single His-tagged ligand from heterogeneous mixture is in principle possible); lack of components interfering with capture technology (histidine-rich contaminants for Ni-NTA sensors; free biotin for streptavidin sensors; primary amine containing buffer components for NHS-EDC chemical cross-linking)<\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\"><strong>Analyte: <\/strong>Stable in assay buffer (no aggregation!); known concentration; equilibrated in an assay buffer<\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p><span style=\"font-family: georgia, palatino, serif;\"><\/span><\/p>\n<p class=\"wp-block-paragraph\" style=\"text-align: left;\"><span style=\"font-family: georgia, palatino, serif; font-size: 14pt; color: #339966;\"><strong><span class=\"has-inline-color has-vivid-green-cyan-color\">Further reading<\/span><\/strong><\/span><\/p>\n<p style=\"text-align: left;\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt;\"><\/span><\/p>\n<p style=\"text-align: left;\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt;\"><\/span><\/p>\n<ol class=\"wp-block-list\" type=\"1\">\n<li style=\"text-align: left;\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt;\"><a href=\"https:\/\/www.sprpages.nl\/\">h<span class=\"has-inline-color has-vivid-cyan-blue-color\">ttps:\/\/www.sprpages.nl\/<\/span><\/a><\/span><\/li>\n<li style=\"text-align: left;\"><span style=\"font-family: georgia, palatino, serif; font-size: 12pt;\"><a href=\"https:\/\/cdn.gelifesciences.com\/dmm3bwsv3\/AssetStream.aspx?mediaformatid=10061&amp;destinationid=10016&amp;assetid=16477\"><span class=\"has-inline-color has-vivid-cyan-blue-color\">https:\/\/cdn.gelifesciences.com\/dmm3bwsv3\/AssetStream.aspx?mediaformatid=10061&amp;destinationid=10016&amp;assetid=16477<\/span><\/a><\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Handbook of Surface Plasmon Resonance 2nd Edition, Richard B M Schasfoort (Editor), Royal Society of Chemistry 2017. ISBN-13: 978-1782627302. ISBN-10: 1782627308<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Z. Gorodkiewicz E, Lukaszewski Z. Recent Progress in Surface Plasmon Resonance Biosensors (2016 to Mid-2018). Biosensors (Basel). 2018, 8(4). pii: E132. doi: 10.3390\/bios8040132. PubMed PMID: 30558384.<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Nguyen HH, et al. Surface plasmon resonance: a versatile technique for biosensor applications. Sensors (Basel). 2015, 15(5):10481-510. doi: 10.3390\/s150510481. PubMed PMID: 25951336.<\/span><\/li>\n<li><span style=\"font-family: georgia, palatino, serif; font-size: 12pt; color: #000000;\">Patching SG. Surface plasmon resonance spectroscopy for characterization of membrane protein-ligand interactions and its potential for drug discovery. Biochim Biophys Acta. 2014, 1838(1 Pt A):43-55. doi: 10.1016\/j.bbamem.2013.04.028. PubMed PMID: 23665295.<\/span><\/li>\n<\/ol>\n<p><\/p>\n<p><\/p>\n<p class=\"wp-block-paragraph\"><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Surface Plasmon Resonance Room 612 Contact: K. Skowronek Access: collaboration\/contracted research, experienced users (internal) Biacore S200 (GE Healthcare), 20General description This technique is used for detailed kinetic characterization of bi-molecular interactions. One of interacting partners (interactants) is immobilized on sensor surface (ligand) while the other one (analyte) is injected with a buffer. By measuring SPR [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"elementor_header_footer","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-225","page","type-page","status-publish","hentry","entry"],"_links":{"self":[{"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/pages\/225","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/comments?post=225"}],"version-history":[{"count":24,"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/pages\/225\/revisions"}],"predecessor-version":[{"id":2032,"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/pages\/225\/revisions\/2032"}],"wp:attachment":[{"href":"https:\/\/core-facility.iimcb.gov.pl\/wp-json\/wp\/v2\/media?parent=225"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}